Variant: 1:2408110 G / C

This is the site quality distribution for all variants with 0.002 < AF < 0.005 in Iranome.

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies

Population	Allele Count	Allele Number	Number of Homozygotes	Number of Heterozygotes	Homozygous Genotype Freq.	Heterozygous Genotype Freq.	Allele Frequency
Persian	3	200	1	1	0.01	0.01	0.015
Turkmen	2	200	0	2	0.0	0.02	0.01
Azeri	1	200	0	1	0.0	0.01	0.005
Arab	0	204	0	0	0.0	0.0	0
Baloch	0	202	0	0	0.0	0.0	0
Gilaki	0	198	0	0	0.0	0.0	0
Kurd	0	200	0	0	0.0	0.0	0
Lur	0	200	0	0	0.0	0.0	0
Mazani	0	200	0	0	0.0	0.0	0
Persian Gulf Islander	0	200	0	0	0.0	0.0	0
Sistani	0	200	0	0	0.0	0.0	0
Zartoshti	0	200	0	0	0.0	0.0	0
Total	6	2404	1	4	0.0008319467554076539	0.0033277870216306157	0.002496

Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations

Metric	Prediction
SIFT Pred (C)	Tolerated
Polyphen2 HVAR Pred (C)	Benign
MutationTaster Pred (C)	Damaging
MutationAssessor Pred (C)	Predicted non-functional (low)
FATHMM Pred (C)	Tolerated
FATHMM MKL Coding Pred (C)	Damaging
N of 6 Predicted Damaging	2 of 6 Predicted as Damaging
N of 6 Predicted Tolerated	4 of 6 Predicted as Tolerated
MetaSVM Pred	Tolerated
MetaLR Pred	Tolerated
GERP++ RS	2.67
CADD Score (Phred Scale)	9.147
Ada Score	?
RF Score	?
PDIVAS Score	?
ConSplice Score	?
REVEL Score	0.036

Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above