1:2409310 G / T


Site Quality
357.47
Filter Status
PASS
1e+22e+21e+32e+31e+42e+41e+52e+51e+60123456789101112
This is the site quality distribution for all variants with 0.002 < AF < 0.005 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Gilaki 3 198 1 1 0.0101 0.0101 0.01515
Azeri 3 200 0 3 0.0 0.03 0.015
Mazani 3 200 1 1 0.01 0.01 0.015
Persian Gulf Islander 2 200 0 2 0.0 0.02 0.01
Arab 0 204 0 0 0.0 0.0 0
Baloch 0 202 0 0 0.0 0.0 0
Kurd 0 200 0 0 0.0 0.0 0
Lur 0 200 0 0 0.0 0.0 0
Persian 0 200 0 0 0.0 0.0 0
Sistani 0 200 0 0 0.0 0.0 0
Turkmen 0 200 0 0 0.0 0.0 0
Zartoshti 0 200 0 0 0.0 0.0 0
Total 11 2404 2 7 0.0016638935108153079 0.005823627287853577 0.004576
Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 1.21
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

1020304050607080900.00.51.01.52.02.53.0
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above