1:2422614 G / A


Site Quality
1126160.0
Filter Status
PASS
1e+42e+43e+41e+52e+53e+51e+62e+63e+601234567
This is the site quality distribution for all variants with 0.5 < AF < 1 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Zartoshti 166 200 70 26 0.7 0.26 0.83
Turkmen 153 200 61 31 0.61 0.31 0.765
Sistani 150 200 54 42 0.54 0.42 0.75
Gilaki 148 198 54 40 0.5455 0.404 0.7475
Mazani 139 200 46 47 0.46 0.47 0.695
Arab 141 204 53 35 0.5196 0.3431 0.6912
Baloch 138 202 45 48 0.4455 0.4752 0.6832
Lur 134 200 44 46 0.44 0.46 0.67
Azeri 132 200 44 44 0.44 0.44 0.66
Persian Gulf Islander 131 200 44 43 0.44 0.43 0.655
Persian 130 200 44 42 0.44 0.42 0.65
Kurd 123 200 42 39 0.42 0.39 0.615
Total 1685 2404 601 483 0.5 0.4018302828618968 0.7009
Annotations

This variant falls on 7 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 2.66
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

102030405060708090050100150200250300
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above