1:2434460 G / T

dbSNP
rs558057709
Allele Frequency
0.003328
Allele Count
8 / 2404
UCSC
1-2434460-G-T
ClinVar
Click to search for variant in Clinvar
Ensembl
Click to search for variant in Ensembl
gnomAD Browser
Click to search for variant in gnomAD Browser
Site Quality
9941.97
Filter Status
PASS
1e+22e+21e+32e+31e+42e+41e+52e+51e+60123456789101112
This is the site quality distribution for all variants with 0.002 < AF < 0.005 in Iranome.
 Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.
Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Persian Gulf Islander 2 200 0 2 0.0 0.02 0.01
Sistani 2 200 0 2 0.0 0.02 0.01
Gilaki 1 198 0 1 0.0 0.0101 0.005051
Persian 1 200 0 1 0.0 0.01 0.005
Baloch 1 202 0 1 0.0 0.0099 0.00495
Arab 1 204 0 1 0.0 0.0098 0.004902
Azeri 0 200 0 0 0.0 0.0 0
Kurd 0 200 0 0 0.0 0.0 0
Lur 0 200 0 0 0.0 0.0 0
Mazani 0 200 0 0 0.0 0.0 0
Turkmen 0 200 0 0 0.0 0.0 0
Zartoshti 0 200 0 0 0.0 0.0 0
Total 8 2404 0 8 0.0 0.0066555740432612314 0.003328
Annotations

This variant falls on 9 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 3.924
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score 0.004

Quality Metrics

1020304050607080900.00.20.40.60.81.01.21.41.61.82.0
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above