Variant: 1:2436489 T / G

This is the site quality distribution for all variants with 0.001 < AF < 0.002 in Iranome.

Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies

Population	Allele Count	Allele Number	Number of Heterozygotes	Homozygous Genotype Freq.	Heterozygous Genotype Freq.	Allele Frequency
Azeri	1	200	1	0.0	0.01	0.005
Baloch	1	202	1	0.0	0.0099	0.00495
Arab	1	204	1	0.0	0.0098	0.004902
Gilaki	0	198	0	0.0	0.0	0
Kurd	0	200	0	0.0	0.0	0
Lur	0	200	0	0.0	0.0	0
Mazani	0	200	0	0.0	0.0	0
Persian	0	200	0	0.0	0.0	0
Persian Gulf Islander	0	200	0	0.0	0.0	0
Sistani	0	200	0	0.0	0.0	0
Turkmen	0	200	0	0.0	0.0	0
Zartoshti	0	200	0	0.0	0.0	0
Total	3	2404	3	0.0	0.0024958402662229617	0.001248

Annotations

This variant falls on 8 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations

Metric	Prediction
SIFT Pred (C)	Damaging
Polyphen2 HVAR Pred (C)	Benign
MutationTaster Pred (C)	Damaging
MutationAssessor Pred (C)	Predicted non-functional (low)
FATHMM Pred (C)	Tolerated
FATHMM MKL Coding Pred (C)	Damaging
N of 6 Predicted Damaging	3 of 6 Predicted as Damaging
N of 6 Predicted Tolerated	3 of 6 Predicted as Tolerated
MetaSVM Pred	Tolerated
MetaLR Pred	Tolerated
GERP++ RS	3.32
CADD Score (Phred Scale)	3.988
Ada Score	?
RF Score	?
PDIVAS Score	?
ConSplice Score	?
REVEL Score	0.145,0.102

Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above