12:21592094 G / T


Site Quality
2321.86
Filter Status
PASS
1e+32e+31e+42e+41e+52e+51e+6012345678
This is the site quality distribution for all variants with 0.02 < AF < 0.05 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Sistani 13 200 6 1 0.06 0.01 0.065
Arab 12 204 6 0 0.0588 0.0 0.05882
Turkmen 11 200 5 1 0.05 0.01 0.055
Zartoshti 10 200 5 0 0.05 0.0 0.05
Kurd 8 200 4 0 0.04 0.0 0.04
Lur 8 200 4 0 0.04 0.0 0.04
Persian Gulf Islander 8 200 4 0 0.04 0.0 0.04
Baloch 8 202 4 0 0.0396 0.0 0.0396
Gilaki 4 198 2 0 0.0202 0.0 0.0202
Azeri 4 200 2 0 0.02 0.0 0.02
Persian 4 200 2 0 0.02 0.0 0.02
Mazani 2 200 1 0 0.01 0.0 0.01
Total 92 2404 45 2 0.03743760399334443 0.0016638935108153079 0.03827
Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 1.936
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

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Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above