12:21592406 A / T


Site Quality
3929.64
Filter Status
PASS
1e+32e+33e+31e+42e+43e+41e+52e+53e+50.00.51.01.52.02.53.03.54.0
This is the site quality distribution for all variants with 0.05 < AF < 0.1 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Zartoshti 26 200 12 2 0.12 0.02 0.13
Azeri 20 200 9 2 0.09 0.02 0.1
Persian Gulf Islander 19 200 9 1 0.09 0.01 0.095
Kurd 14 200 7 0 0.07 0.0 0.07
Baloch 13 202 6 1 0.0594 0.0099 0.06436
Mazani 12 200 5 2 0.05 0.02 0.06
Sistani 12 200 5 2 0.05 0.02 0.06
Gilaki 10 198 5 0 0.0505 0.0 0.05051
Persian 8 200 4 0 0.04 0.0 0.04
Turkmen 6 200 3 0 0.03 0.0 0.03
Lur 4 200 2 0 0.02 0.0 0.02
Arab 1 204 0 1 0.0 0.0098 0.004902
Total 145 2404 67 11 0.05574043261231281 0.009151414309484194 0.06032
Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 1.164
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

1020304050607080900510152025303540455055
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above