12:21592546 A / T


Site Quality
2960.64
Filter Status
PASS
1e+32e+33e+31e+42e+43e+41e+52e+53e+50.00.51.01.52.02.53.03.54.0
This is the site quality distribution for all variants with 0.05 < AF < 0.1 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Zartoshti 24 200 11 2 0.11 0.02 0.12
Baloch 21 202 10 1 0.099 0.0099 0.104
Sistani 18 200 9 0 0.09 0.0 0.09
Mazani 15 200 6 3 0.06 0.03 0.075
Persian Gulf Islander 14 200 7 0 0.07 0.0 0.07
Kurd 10 200 5 0 0.05 0.0 0.05
Persian 6 200 3 0 0.03 0.0 0.03
Arab 6 204 3 0 0.0294 0.0 0.02941
Gilaki 4 198 2 0 0.0202 0.0 0.0202
Turkmen 4 200 2 0 0.02 0.0 0.02
Azeri 3 200 1 1 0.01 0.01 0.015
Lur 2 200 1 0 0.01 0.0 0.01
Total 127 2404 60 7 0.04991680532445923 0.005823627287853577 0.05283
Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 0.147
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

1020304050607080900510152025303540455055
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above