12:21593007 G / C


Site Quality
1586.32
Filter Status
PASS
1e+22e+23e+21e+32e+33e+31e+42e+43e+40.00.51.01.52.02.53.03.54.04.55.0
This is the site quality distribution for all variants with 0.01 < AF < 0.02 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Mazani 9 200 2 5 0.02 0.05 0.045
Zartoshti 7 200 1 5 0.01 0.05 0.035
Kurd 4 200 2 0 0.02 0.0 0.02
Arab 3 204 1 1 0.0098 0.0098 0.01471
Gilaki 2 198 1 0 0.0101 0.0 0.0101
Lur 2 200 1 0 0.01 0.0 0.01
Turkmen 2 200 1 0 0.01 0.0 0.01
Azeri 1 200 0 1 0.0 0.01 0.005
Persian Gulf Islander 1 200 0 1 0.0 0.01 0.005
Baloch 1 202 0 1 0.0 0.0099 0.00495
Persian 0 200 0 0 0.0 0.0 0
Sistani 0 200 0 0 0.0 0.0 0
Total 32 2404 9 14 0.0074875207986688855 0.011647254575707155 0.01331
Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 0.726
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

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Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above