12:21594378 CTT / _


Site Quality
9140.28
Filter Status
PASS
1e+32e+33e+31e+42e+43e+41e+52e+53e+50.00.51.01.52.02.53.03.54.0
This is the site quality distribution for all variants with 0.05 < AF < 0.1 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Zartoshti 43 200 20 3 0.2 0.03 0.215
Mazani 29 200 14 1 0.14 0.01 0.145
Persian Gulf Islander 23 200 11 1 0.11 0.01 0.115
Sistani 17 200 8 1 0.08 0.01 0.085
Gilaki 14 198 7 0 0.0707 0.0 0.07071
Azeri 14 200 6 2 0.06 0.02 0.07
Kurd 12 200 6 0 0.06 0.0 0.06
Baloch 10 202 5 0 0.0495 0.0 0.0495
Lur 6 200 3 0 0.03 0.0 0.03
Arab 6 204 3 0 0.0294 0.0 0.02941
Persian 4 200 2 0 0.02 0.0 0.02
Turkmen 4 200 2 0 0.02 0.0 0.02
Total 182 2404 87 8 0.0723793677204659 0.0066555740432612314 0.07571
Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 1.35
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

10203040506070809005101520253035404550
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above