12:21598701 T / C


Site Quality
31879.3
Filter Status
PASS
3e+21e+32e+33e+31e+42e+43e+41e+52e+53e+50.00.51.01.52.02.53.0
This is the site quality distribution for all variants with 0.2 < AF < 0.5 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Zartoshti 84 200 39 6 0.39 0.06 0.42
Baloch 69 202 25 19 0.2475 0.1881 0.3416
Persian Gulf Islander 64 200 23 18 0.23 0.18 0.32
Mazani 61 200 26 9 0.26 0.09 0.305
Kurd 59 200 25 9 0.25 0.09 0.295
Sistani 58 200 24 10 0.24 0.1 0.29
Arab 50 204 22 6 0.2157 0.0588 0.2451
Gilaki 46 198 21 4 0.2121 0.0404 0.2323
Azeri 44 200 19 6 0.19 0.06 0.22
Lur 29 200 13 3 0.13 0.03 0.145
Turkmen 12 200 5 2 0.05 0.02 0.06
Persian 4 200 2 0 0.02 0.0 0.02
Total 580 2404 244 92 0.20299500831946754 0.07653910149750416 0.2413
Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 3.535
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

102030405060708090010203040506070
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above