12:21600865 T / C


Site Quality
32841.7
Filter Status
PASS
2e+33e+34e+35e+31e+42e+43e+44e+45e+41e+50.00.51.01.52.02.53.0
This is the site quality distribution for all variants with 0.1 < AF < 0.2 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Zartoshti 77 200 31 15 0.31 0.15 0.385
Baloch 60 202 21 18 0.2079 0.1782 0.297
Persian Gulf Islander 59 200 21 17 0.21 0.17 0.295
Mazani 48 200 18 12 0.18 0.12 0.24
Sistani 41 200 15 11 0.15 0.11 0.205
Arab 25 204 10 5 0.098 0.049 0.1225
Gilaki 22 198 10 2 0.101 0.0202 0.1111
Azeri 17 200 7 3 0.07 0.03 0.085
Lur 15 200 7 1 0.07 0.01 0.075
Kurd 14 200 6 2 0.06 0.02 0.07
Turkmen 11 200 3 5 0.03 0.05 0.055
Persian 10 200 5 0 0.05 0.0 0.05
Total 399 2404 154 91 0.1281198003327787 0.07570715474209651 0.166
Annotations

This variant falls on 7 transcripts in 2 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 0.586
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

1020304050607080900510152025303540
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above