12:21602237 T / C


Site Quality
903.23
Filter Status
PASS
2e+13e+11e+22e+23e+21e+32e+33e+31e+40.00.51.01.52.02.53.03.54.04.55.0
This is the site quality distribution for all variants with 0.005 < AF < 0.01 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Gilaki 3 198 1 1 0.0101 0.0101 0.01515
Kurd 3 200 1 1 0.01 0.01 0.015
Sistani 3 200 1 1 0.01 0.01 0.015
Persian 2 200 1 0 0.01 0.0 0.01
Zartoshti 2 200 0 2 0.0 0.02 0.01
Azeri 1 200 0 1 0.0 0.01 0.005
Baloch 1 202 0 1 0.0 0.0099 0.00495
Arab 0 204 0 0 0.0 0.0 0
Lur 0 200 0 0 0.0 0.0 0
Mazani 0 200 0 0 0.0 0.0 0
Persian Gulf Islander 0 200 0 0 0.0 0.0 0
Turkmen 0 200 0 0 0.0 0.0 0
Total 15 2404 4 7 0.0033277870216306157 0.005823627287853577 0.00624
Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 4.355
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

1020304050607080900.00.51.01.52.02.53.0
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above