12:21602959 TT / _


Site Quality
13878.0
Filter Status
PASS
1e+22e+23e+21e+32e+33e+31e+42e+43e+40.00.51.01.52.02.53.03.54.04.55.0
This is the site quality distribution for all variants with 0.01 < AF < 0.02 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Mazani 16 200 7 2 0.07 0.02 0.08
Sistani 14 200 7 0 0.07 0.0 0.07
Baloch 8 202 4 0 0.0396 0.0 0.0396
Zartoshti 6 200 3 0 0.03 0.0 0.03
Gilaki 2 198 1 0 0.0101 0.0 0.0101
Arab 0 204 0 0 0.0 0.0 0
Azeri 0 200 0 0 0.0 0.0 0
Kurd 0 200 0 0 0.0 0.0 0
Lur 0 200 0 0 0.0 0.0 0
Persian 0 200 0 0 0.0 0.0 0
Persian Gulf Islander 0 200 0 0 0.0 0.0 0
Turkmen 0 200 0 0 0.0 0.0 0
Total 46 2404 22 2 0.018302828618968387 0.0016638935108153079 0.01913
Annotations

This variant falls on 6 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 1.5
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

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Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above