12:21608043 A / G


Site Quality
76648.0
Filter Status
PASS
3e+21e+32e+33e+31e+42e+43e+41e+52e+53e+50.00.51.01.52.02.53.0
This is the site quality distribution for all variants with 0.2 < AF < 0.5 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Zartoshti 100 200 37 26 0.37 0.26 0.5
Mazani 84 200 30 24 0.3 0.24 0.42
Persian Gulf Islander 81 200 24 33 0.24 0.33 0.405
Baloch 80 202 22 36 0.2178 0.3564 0.396
Kurd 69 200 20 29 0.2 0.29 0.345
Azeri 61 200 22 17 0.22 0.17 0.305
Gilaki 57 198 20 17 0.202 0.1717 0.2879
Sistani 55 200 18 19 0.18 0.19 0.275
Arab 48 204 14 20 0.1373 0.1961 0.2353
Lur 36 200 14 8 0.14 0.08 0.18
Turkmen 27 200 11 5 0.11 0.05 0.135
Persian 19 200 7 5 0.07 0.05 0.095
Total 717 2404 239 239 0.19883527454242927 0.19883527454242927 0.2983
Annotations

This variant falls on 7 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 2.301
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

1020304050607080900102030405060708090100
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above