12:21609288 C / T


Site Quality
45077.7
Filter Status
PASS
3e+21e+32e+33e+31e+42e+43e+41e+52e+53e+50.00.51.01.52.02.53.0
This is the site quality distribution for all variants with 0.2 < AF < 0.5 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Zartoshti 83 200 34 15 0.34 0.15 0.415
Baloch 73 202 23 27 0.2277 0.2673 0.3614
Persian Gulf Islander 71 200 22 27 0.22 0.27 0.355
Mazani 65 200 25 15 0.25 0.15 0.325
Kurd 42 200 14 14 0.14 0.14 0.21
Azeri 40 200 15 10 0.15 0.1 0.2
Sistani 40 200 14 12 0.14 0.12 0.2
Gilaki 39 198 15 9 0.1515 0.0909 0.197
Arab 35 204 13 9 0.1275 0.0882 0.1716
Lur 24 200 9 6 0.09 0.06 0.12
Persian 14 200 7 0 0.07 0.0 0.07
Turkmen 9 200 3 3 0.03 0.03 0.045
Total 535 2404 194 147 0.16139767054908485 0.12229617304492513 0.2225
Annotations

This variant falls on 7 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 3.545
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

102030405060708090051015202530354045505560
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above