12:21609323 C / A


Site Quality
12686.4
Filter Status
PASS
2e+33e+34e+35e+31e+42e+43e+44e+45e+41e+50.00.51.01.52.02.53.0
This is the site quality distribution for all variants with 0.1 < AF < 0.2 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Persian Gulf Islander 51 200 19 13 0.19 0.13 0.255
Zartoshti 34 200 14 6 0.14 0.06 0.17
Baloch 27 202 9 9 0.0891 0.0891 0.1337
Mazani 21 200 9 3 0.09 0.03 0.105
Gilaki 19 198 8 3 0.0808 0.0303 0.09596
Sistani 19 200 6 7 0.06 0.07 0.095
Kurd 18 200 6 6 0.06 0.06 0.09
Arab 15 204 6 3 0.0588 0.0294 0.07353
Persian 12 200 6 0 0.06 0.0 0.06
Lur 10 200 4 2 0.04 0.02 0.05
Turkmen 10 200 5 0 0.05 0.0 0.05
Azeri 7 200 1 5 0.01 0.05 0.035
Total 243 2404 93 57 0.07737104825291181 0.04742096505823627 0.1011
Annotations

This variant falls on 7 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 1.284
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

1020304050607080900510152025303540
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above