12:21616259 C / T


Site Quality
2619.44
Filter Status
PASS
1e+32e+31e+42e+41e+52e+51e+6012345678
This is the site quality distribution for all variants with 0.02 < AF < 0.05 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Mazani 27 200 13 1 0.13 0.01 0.135
Sistani 16 200 8 0 0.08 0.0 0.08
Zartoshti 11 200 5 1 0.05 0.01 0.055
Persian Gulf Islander 10 200 4 2 0.04 0.02 0.05
Azeri 9 200 4 1 0.04 0.01 0.045
Baloch 8 202 4 0 0.0396 0.0 0.0396
Gilaki 6 198 3 0 0.0303 0.0 0.0303
Lur 4 200 2 0 0.02 0.0 0.02
Turkmen 4 200 2 0 0.02 0.0 0.02
Kurd 2 200 1 0 0.01 0.0 0.01
Arab 2 204 1 0 0.0098 0.0 0.009804
Persian 0 200 0 0 0.0 0.0 0
Total 99 2404 47 5 0.039101497504159734 0.004159733777038269 0.04118
Annotations

This variant falls on 5 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 3.519
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

1020304050607080900510152025
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above