12:21645680 C / A


Site Quality
724.12
Filter Status
PASS
1e+22e+23e+21e+32e+33e+31e+42e+43e+40.00.51.01.52.02.53.03.54.04.55.0
This is the site quality distribution for all variants with 0.01 < AF < 0.02 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Azeri 10 200 5 0 0.05 0.0 0.05
Lur 6 200 3 0 0.03 0.0 0.03
Zartoshti 6 200 3 0 0.03 0.0 0.03
Persian 5 200 2 1 0.02 0.01 0.025
Mazani 4 200 2 0 0.02 0.0 0.02
Gilaki 2 198 1 0 0.0101 0.0 0.0101
Kurd 2 200 1 0 0.01 0.0 0.01
Baloch 2 202 1 0 0.0099 0.0 0.009901
Arab 2 204 1 0 0.0098 0.0 0.009804
Persian Gulf Islander 0 200 0 0 0.0 0.0 0
Sistani 0 200 0 0 0.0 0.0 0
Turkmen 0 200 0 0 0.0 0.0 0
Total 39 2404 19 1 0.015806988352745424 0.0008319467554076539 0.01622
Annotations

This variant falls on 8 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 8.865
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

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Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above