12:21652641 G / A


Site Quality
59921.1
Filter Status
PASS
2e+33e+34e+35e+31e+42e+43e+44e+45e+41e+50.00.51.01.52.02.53.0
This is the site quality distribution for all variants with 0.1 < AF < 0.2 in Iranome.
Note: These are site-level quality metrics: they may be unpredictable for multi-allelic sites.

Population Frequencies
Population
Allele Count
Allele Number
Number of Homozygotes
Number of Heterozygotes
Homozygous Genotype Freq.
Heterozygous Genotype Freq.
Allele Frequency
Persian Gulf Islander 45 200 8 29 0.08 0.29 0.225
Gilaki 38 198 5 28 0.0505 0.2828 0.1919
Mazani 38 200 6 26 0.06 0.26 0.19
Zartoshti 37 200 3 31 0.03 0.31 0.185
Sistani 32 200 5 22 0.05 0.22 0.16
Baloch 30 202 3 24 0.0297 0.2376 0.1485
Azeri 27 200 3 21 0.03 0.21 0.135
Kurd 24 200 3 18 0.03 0.18 0.12
Arab 24 204 4 16 0.0392 0.1569 0.1176
Persian 15 200 5 5 0.05 0.05 0.075
Lur 14 200 4 6 0.04 0.06 0.07
Turkmen 9 200 3 3 0.03 0.03 0.045
Total 333 2404 52 229 0.04326123128119801 0.19051580698835274 0.1385
Annotations

This variant falls on 8 transcripts in 1 genes:

Note: This list may not include additional transcripts in the same gene that the variant does not overlap.

Additional Annotations
Metric Prediction
SIFT Pred (C) ?
Polyphen2 HVAR Pred (C) ?
MutationTaster Pred (C) ?
MutationAssessor Pred (C) ?
FATHMM Pred (C) ?
FATHMM MKL Coding Pred (C) ?
N of 6 Predicted Damaging ?
N of 6 Predicted Tolerated ?
MetaSVM Pred ?
MetaLR Pred ?
GERP++ RS ?
CADD Score (Phred Scale) 3.982
Ada Score ?
RF Score ?
PDIVAS Score ?
ConSplice Score ?
REVEL Score ?

Quality Metrics

1020304050607080900510152025303540
Note: Plot may include low-quality genotypes that were excluded from allele counts in the table above